CSE 555/655 - Biological and Linguistic Sequence Analysis - Lecture 13

• Tentative outline:
• Aligning multiple sequences
• Minimum sum-of-pairs alignment
• Exact dynamic programming for sum-of-pairs
• Heuristics and approximations to sum-of-pairs
• Phylogenic tree-based alignment
• Iterative pairwise alignment
• Progressive alignment
• Repeated motifs
• Lecture slides link (when available):